Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 AC144522.1-201ENST00000625111 1658 ntBASIC15.89■□□□□ 0.13
LRCH3Q96II8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LRCH3Q96II8 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRCH3Q96II8 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 AP005117.1-202ENST00000581724 1908 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 CYP4F23P-201ENST00000593402 1579 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 NME6-208ENST00000435684 599 ntTSL 2 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 RPL3P5-201ENST00000441645 1232 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 ITGB5-AS1-201ENST00000495917 460 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 USB1-205ENST00000561743 1135 ntTSL 3 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 AC009948.4-201ENST00000604692 675 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 AC138696.2-201ENST00000607376 223 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 AC010976.2-201ENST00000609697 852 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 REXO1L5P-201ENST00000622260 2098 ntBASIC15.88■□□□□ 0.13
LRCH3Q96II8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LRCH3Q96II8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
LRCH3Q96II8 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 HLA-K-203ENST00000430151 1046 ntBASIC15.87■□□□□ 0.13
LRCH3Q96II8 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC093826.1-201ENST00000508655 993 ntBASIC15.87■□□□□ 0.13
LRCH3Q96II8 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC226150.1-201ENST00000544259 466 ntBASIC15.87■□□□□ 0.13
LRCH3Q96II8 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC140113.1-201ENST00000603467 169 ntBASIC15.87■□□□□ 0.13
LRCH3Q96II8 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC090510.3-201ENST00000615831 821 ntBASIC15.87■□□□□ 0.13
LRCH3Q96II8 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
LRCH3Q96II8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
LRCH3Q96II8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.86■□□□□ 0.13
LRCH3Q96II8 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
LRCH3Q96II8 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms