Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC023310.1-201ENST00000554836 735 ntBASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 AC007191.1-201ENST00000623179 2995 ntBASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.67■□□□□ 0.42
CHMP4CQ96CF2 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AC023090.2-201ENST00000625182 2110 ntBASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 FAM8A4P-201ENST00000435433 1213 ntBASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AP003171.2-201ENST00000528208 925 ntBASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 CLUHP2-201ENST00000426660 1303 ntBASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.66■□□□□ 0.42
CHMP4CQ96CF2 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 MTHFR-210ENST00000641407 2387 ntBASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP4CQ96CF2 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms