Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 PID1-202ENST00000392054 2745 ntTSL 2 BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
CCDC54Q8NEL0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 ACTBP8-201ENST00000403258 1108 ntBASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 MRPS18AP1-201ENST00000414458 589 ntBASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 AC133539.2-201ENST00000604757 467 ntBASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 TMEM261P1-201ENST00000604899 340 ntBASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CCDC54Q8NEL0 AC041040.2-201ENST00000622926 2899 ntBASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 SALL4P5-201ENST00000419001 1760 ntBASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.96□□□□□ -0.34
CCDC54Q8NEL0 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AP001267.2-201ENST00000532619 2086 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 ZNF646-202ENST00000394979 8118 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 TCAM1P-207ENST00000485295 1537 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AC011840.2-201ENST00000563063 1520 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 RNU1-114P-201ENST00000365297 166 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AC092552.1-201ENST00000547243 906 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 AC093512.1-201ENST00000617969 520 ntBASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CCDC54Q8NEL0 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms