Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
CXCL12P48061 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 COX20P1-201ENST00000366529 357 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL12P48061 AC092580.1-201ENST00000433998 658 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL12P48061 SCARNA12-201ENST00000459155 270 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 RN7SL494P-201ENST00000461517 304 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 PPIA-208ENST00000489459 907 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL12P48061 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
CXCL12P48061 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.48□□□□□ -0.09
CXCL12P48061 AP005264.6-204ENST00000588436 719 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 HMGB1P24-201ENST00000611897 328 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 PPIA-210ENST00000620047 827 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL12P48061 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.48□□□□□ -0.09
CXCL12P48061 AC009145.4-201ENST00000625119 1294 ntBASIC14.48□□□□□ -0.09
CXCL12P48061 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
CXCL12P48061 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.48□□□□□ -0.09
CXCL12P48061 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CXCL12P48061 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CXCL12P48061 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.47□□□□□ -0.09
CXCL12P48061 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.47□□□□□ -0.09
CXCL12P48061 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 ACTG1P19-201ENST00000418987 1116 ntBASIC14.47□□□□□ -0.09
CXCL12P48061 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 AC244197.1-201ENST00000456494 951 ntBASIC14.47□□□□□ -0.09
CXCL12P48061 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.47□□□□□ -0.09
CXCL12P48061 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.47□□□□□ -0.09
CXCL12P48061 HINT1-205ENST00000508488 703 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.47□□□□□ -0.09
CXCL12P48061 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
CXCL12P48061 AC018695.6-201ENST00000614011 534 ntBASIC14.47□□□□□ -0.09
CXCL12P48061 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 BRD7P5-201ENST00000299197 1822 ntBASIC14.47□□□□□ -0.09
CXCL12P48061 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.47□□□□□ -0.09
CXCL12P48061 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.47□□□□□ -0.09
CXCL12P48061 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CXCL12P48061 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
CXCL12P48061 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.46□□□□□ -0.09
CXCL12P48061 AC112693.3-201ENST00000624819 1983 ntBASIC14.46□□□□□ -0.09
CXCL12P48061 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.46□□□□□ -0.09
CXCL12P48061 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CXCL12P48061 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms