Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.15□□□□□ -0.14
MSX2P35548 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 MIR6080-201ENST00000617359 66 ntBASIC14.15□□□□□ -0.14
MSX2P35548 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX2P35548 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
MSX2P35548 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX2P35548 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MSX2P35548 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
MSX2P35548 LINC02486-201ENST00000604157 3000 ntBASIC14.15□□□□□ -0.15
MSX2P35548 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
MSX2P35548 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 MKNK2P1-201ENST00000437526 628 ntBASIC14.14□□□□□ -0.15
MSX2P35548 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
MSX2P35548 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.14□□□□□ -0.15
MSX2P35548 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 FDX1P1-201ENST00000449115 551 ntBASIC14.14□□□□□ -0.15
MSX2P35548 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.14□□□□□ -0.15
MSX2P35548 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
MSX2P35548 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.14□□□□□ -0.15
MSX2P35548 AC120114.3-201ENST00000611923 658 ntBASIC14.14□□□□□ -0.15
MSX2P35548 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 PCDHA6-201ENST00000378126 3267 ntBASIC14.14□□□□□ -0.15
MSX2P35548 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
MSX2P35548 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
MSX2P35548 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX2P35548 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
MSX2P35548 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 ELL2P1-201ENST00000413990 1906 ntBASIC14.13□□□□□ -0.15
MSX2P35548 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 C2-206ENST00000442278 2434 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
MSX2P35548 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX2P35548 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
MSX2P35548 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms