Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.81■□□□□ 0.28
SMARCA1P28370 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.81■□□□□ 0.28
SMARCA1P28370 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMARCA1P28370 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMARCA1P28370 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMARCA1P28370 AC018629.1-201ENST00000623381 1736 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 SDCCAG3P2-201ENST00000326105 1023 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.8■□□□□ 0.28
SMARCA1P28370 AC011742.3-201ENST00000439053 820 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 OR2R1P-201ENST00000441404 914 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.8■□□□□ 0.28
SMARCA1P28370 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.8■□□□□ 0.28
SMARCA1P28370 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.8■□□□□ 0.28
SMARCA1P28370 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
SMARCA1P28370 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 AC021016.3-201ENST00000608367 477 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 AL591471.1-201ENST00000621855 229 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMARCA1P28370 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMARCA1P28370 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 LAP3P2-201ENST00000454686 1454 ntBASIC16.8■□□□□ 0.28
SMARCA1P28370 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
SMARCA1P28370 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SMARCA1P28370 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SMARCA1P28370 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SMARCA1P28370 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SMARCA1P28370 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.79■□□□□ 0.28
SMARCA1P28370 FNTAP2-201ENST00000430308 634 ntBASIC16.79■□□□□ 0.28
SMARCA1P28370 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.79■□□□□ 0.28
SMARCA1P28370 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 AC099548.2-209ENST00000480264 625 ntBASIC16.79■□□□□ 0.28
SMARCA1P28370 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.79■□□□□ 0.28
SMARCA1P28370 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 AL805961.1-203ENST00000641078 1258 ntBASIC16.79■□□□□ 0.28
SMARCA1P28370 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.79■□□□□ 0.28
SMARCA1P28370 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SMARCA1P28370 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMARCA1P28370 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 BX640514.1-201ENST00000583223 1918 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 FLJ16779-201ENST00000612722 7638 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.78■□□□□ 0.28
SMARCA1P28370 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SMARCA1P28370 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.78■□□□□ 0.28
SMARCA1P28370 MIR3188-201ENST00000583494 85 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 NDUFV2P1-201ENST00000596415 907 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC16.78■□□□□ 0.28
SMARCA1P28370 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMARCA1P28370 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.78■□□□□ 0.28
SMARCA1P28370 AC011498.7-201ENST00000624986 2027 ntBASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms