Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.89□□□□□ -0.35
COL8A1P27658 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 LRTM1-201ENST00000273286 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 ME2P1-201ENST00000426028 1970 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 BANF1P3-201ENST00000412556 261 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 GCSHP3-201ENST00000431120 391 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
COL8A1P27658 RPSAP15-201ENST00000448168 861 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 AC244197.1-201ENST00000456494 951 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 RN7SL81P-201ENST00000493781 261 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC12.89□□□□□ -0.35
COL8A1P27658 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC12.89□□□□□ -0.35
COL8A1P27658 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC12.89□□□□□ -0.35
COL8A1P27658 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC12.89□□□□□ -0.35
COL8A1P27658 OR13I1P-201ENST00000609811 1264 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 AL627230.2-201ENST00000613254 655 ntBASIC12.89□□□□□ -0.35
COL8A1P27658 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC12.89□□□□□ -0.35
COL8A1P27658 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL8A1P27658 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL8A1P27658 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
COL8A1P27658 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 ORAOV1P1-201ENST00000503108 395 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 AP000911.2-201ENST00000534330 502 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 AC060766.1-201ENST00000590824 627 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC12.88□□□□□ -0.35
COL8A1P27658 MIR6720-201ENST00000611664 98 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 LINC00226-202ENST00000618204 1052 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 AL365203.3-201ENST00000609742 2057 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
COL8A1P27658 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.88□□□□□ -0.35
COL8A1P27658 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.88□□□□□ -0.35
COL8A1P27658 AC006449.6-201ENST00000612330 2296 ntBASIC12.88□□□□□ -0.35
COL8A1P27658 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms