Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC12.58□□□□□ -0.4
USF1P22415 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.58□□□□□ -0.4
USF1P22415 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.58□□□□□ -0.4
USF1P22415 AC016629.1-201ENST00000596579 586 ntBASIC12.58□□□□□ -0.4
USF1P22415 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 AC091812.3-201ENST00000621362 345 ntBASIC12.58□□□□□ -0.4
USF1P22415 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
USF1P22415 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.58□□□□□ -0.4
USF1P22415 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.58□□□□□ -0.4
USF1P22415 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
USF1P22415 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC12.57□□□□□ -0.4
USF1P22415 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 AC005730.2-201ENST00000564549 1184 ntBASIC12.57□□□□□ -0.4
USF1P22415 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.57□□□□□ -0.4
USF1P22415 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC12.57□□□□□ -0.4
USF1P22415 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 AP001505.2-201ENST00000616815 443 ntBASIC12.57□□□□□ -0.4
USF1P22415 AC100757.4-201ENST00000626934 759 ntBASIC12.57□□□□□ -0.4
USF1P22415 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 CLUHP2-201ENST00000426660 1303 ntBASIC12.57□□□□□ -0.4
USF1P22415 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.57□□□□□ -0.4
USF1P22415 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USF1P22415 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.57□□□□□ -0.4
USF1P22415 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
USF1P22415 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 POR-201ENST00000394893 2532 ntTSL 5 BASIC12.56□□□□□ -0.4
USF1P22415 AC023024.2-201ENST00000623561 1993 ntBASIC12.56□□□□□ -0.4
USF1P22415 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
USF1P22415 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
USF1P22415 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms