Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC8.85□□□□□ -0.99
APOBP04114 SPTLC1P3-201ENST00000403408 259 ntBASIC8.85□□□□□ -0.99
APOBP04114 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC8.85□□□□□ -0.99
APOBP04114 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC8.85□□□□□ -0.99
APOBP04114 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 AC233724.9-201ENST00000511694 407 ntBASIC8.85□□□□□ -0.99
APOBP04114 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 AC009041.4-201ENST00000620075 638 ntBASIC8.85□□□□□ -0.99
APOBP04114 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC8.85□□□□□ -0.99
APOBP04114 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC8.85□□□□□ -0.99
APOBP04114 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC8.85□□□□□ -0.99
APOBP04114 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 AP000244.1-201ENST00000424582 201 ntBASIC8.84□□□□□ -0.99
APOBP04114 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 RPSAP12-201ENST00000435879 888 ntBASIC8.84□□□□□ -0.99
APOBP04114 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 ABCC6P1-203ENST00000565566 1170 ntBASIC8.84□□□□□ -0.99
APOBP04114 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 CCT8L1P-201ENST00000465400 1674 ntBASIC8.84□□□□□ -0.99
APOBP04114 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 PHBP10-201ENST00000416467 784 ntBASIC8.84□□□□□ -0.99
APOBP04114 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 AC092903.1-201ENST00000466506 262 ntBASIC8.84□□□□□ -0.99
APOBP04114 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 CD44-224ENST00000526669 870 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 ACY3-202ENST00000529256 933 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 SRP14-208ENST00000560773 468 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 DRG2-220ENST00000583355 891 ntTSL 3 BASIC8.84□□□□□ -0.99
APOBP04114 TYMSP2-201ENST00000589501 424 ntBASIC8.84□□□□□ -0.99
APOBP04114 KF455155.1-201ENST00000604493 303 ntBASIC8.84□□□□□ -0.99
APOBP04114 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 KRT8P38-201ENST00000441370 1430 ntBASIC8.84□□□□□ -0.99
APOBP04114 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 CRIP1P2-201ENST00000425396 228 ntBASIC8.84□□□□□ -0.99
APOBP04114 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC8.84□□□□□ -0.99
APOBP04114 AC092910.2-201ENST00000491262 348 ntBASIC8.84□□□□□ -0.99
APOBP04114 AC147876.1-201ENST00000504408 322 ntBASIC8.84□□□□□ -0.99
APOBP04114 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC8.84□□□□□ -0.99
APOBP04114 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
APOBP04114 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
APOBP04114 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC8.84□□□□□ -1
APOBP04114 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC8.84□□□□□ -1
APOBP04114 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -1
APOBP04114 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC8.83□□□□□ -1
APOBP04114 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC8.83□□□□□ -1
APOBP04114 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC8.83□□□□□ -1
APOBP04114 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC8.83□□□□□ -1
APOBP04114 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC8.83□□□□□ -1
APOBP04114 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
APOBP04114 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC8.83□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms