Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
FOXN3O00409 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
FOXN3O00409 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.8■□□□□ 0.12
FOXN3O00409 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 COX20P2-201ENST00000452636 358 ntBASIC15.79■□□□□ 0.12
FOXN3O00409 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXN3O00409 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 COX5BP1-201ENST00000507622 393 ntBASIC15.79■□□□□ 0.12
FOXN3O00409 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXN3O00409 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.79■□□□□ 0.12
FOXN3O00409 RN7SL713P-201ENST00000582127 302 ntBASIC15.79■□□□□ 0.12
FOXN3O00409 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.79■□□□□ 0.12
FOXN3O00409 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.79■□□□□ 0.12
FOXN3O00409 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
FOXN3O00409 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
FOXN3O00409 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
FOXN3O00409 HSPA8P5-201ENST00000456928 2069 ntBASIC15.79■□□□□ 0.12
FOXN3O00409 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
FOXN3O00409 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
FOXN3O00409 MIR1202-201ENST00000408529 83 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 ARSEP1-201ENST00000420443 635 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.78■□□□□ 0.12
FOXN3O00409 CROCCP4-201ENST00000457096 498 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXN3O00409 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.78■□□□□ 0.12
FOXN3O00409 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
FOXN3O00409 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.78■□□□□ 0.12
FOXN3O00409 SORD2P-201ENST00000558556 1069 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 AL358472.3-201ENST00000608147 415 ntBASIC15.78■□□□□ 0.12
FOXN3O00409 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.78■□□□□ 0.12
FOXN3O00409 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.78■□□□□ 0.12
FOXN3O00409 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms