Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC079781.5-202ENST00000641784 3743 ntBASIC14.43□□□□□ -0.1
VPS4AQ9UN37 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC005229.1-201ENST00000392885 409 ntBASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 COG4-212ENST00000564653 590 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 AC113367.3-201ENST00000508316 1912 ntBASIC14.43□□□□□ -0.1
VPS4AQ9UN37 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.43□□□□□ -0.1
VPS4AQ9UN37 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AC007551.1-201ENST00000457394 519 ntBASIC14.42□□□□□ -0.1
VPS4AQ9UN37 KRT8P13-201ENST00000463294 1010 ntBASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
VPS4AQ9UN37 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms