Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 GRPEL2P1-201ENST00000453145 339 ntBASIC18.43■□□□□ 0.54
SCN11AQ9UI33 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 RPS23-207ENST00000511844 530 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 HTR7P1-202ENST00000624664 4411 ntBASIC18.43■□□□□ 0.54
SCN11AQ9UI33 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
SCN11AQ9UI33 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 FES-203ENST00000394302 2133 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC025186.1-201ENST00000478174 870 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC005357.2-202ENST00000590507 1060 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 PDXDC2P-206ENST00000534700 1315 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 RNVU1-8-201ENST00000364272 125 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 RN7SL818P-201ENST00000485099 259 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AP005264.5-201ENST00000590066 467 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 RN7SL725P-201ENST00000606439 259 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 LINC00244-201ENST00000625073 613 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 MSANTD2P1-201ENST00000445341 1368 ntBASIC18.42■□□□□ 0.54
SCN11AQ9UI33 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SCN11AQ9UI33 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 SHMT1P1-201ENST00000419974 1312 ntBASIC18.41■□□□□ 0.54
SCN11AQ9UI33 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AL157792.1-201ENST00000488281 530 ntBASIC18.41■□□□□ 0.54
SCN11AQ9UI33 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC145285.5-201ENST00000562217 361 ntBASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC006158.1-201ENST00000610661 249 ntBASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC011471.3-201ENST00000623576 402 ntBASIC18.41■□□□□ 0.54
SCN11AQ9UI33 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SCN11AQ9UI33 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms