Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SIGLEC22P-201ENST00000599104 714 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 ESR1-214ENST00000638569 132 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC138627.1-201ENST00000641127 1257 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC022080.1-201ENST00000366255 781 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 ALG1L15P-201ENST00000482834 794 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 AC245369.7-201ENST00000631386 350 ntBASIC14.17□□□□□ -0.14
VPS13AQ96RL7 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VPS13AQ96RL7 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC073869.2-201ENST00000417338 1026 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 ST13P19-201ENST00000442505 1124 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 DLK1-205ENST00000556051 469 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CES1P2-201ENST00000566467 1242 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 SIRPB3P-201ENST00000340424 1216 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 EMP3-204ENST00000596315 761 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 LINC00244-201ENST00000625073 613 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 POLR2LP1-206ENST00000444785 187 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AC091304.3-201ENST00000566500 716 ntBASIC14.16□□□□□ -0.14
VPS13AQ96RL7 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VPS13AQ96RL7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 MIR1226-201ENST00000408658 75 ntBASIC14.15□□□□□ -0.14
VPS13AQ96RL7 AC087203.1-201ENST00000532111 1181 ntBASIC14.15□□□□□ -0.14
VPS13AQ96RL7 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 AC010531.8-201ENST00000623341 685 ntBASIC14.15□□□□□ -0.14
VPS13AQ96RL7 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
VPS13AQ96RL7 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms