Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 DNAJB1P1-201ENST00000429417 1024 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 RN7SL8P-201ENST00000461771 266 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 WASH3P-207ENST00000560956 1394 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC092171.5-201ENST00000608012 942 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC074138.1-201ENST00000611182 1303 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 LINC01783-202ENST00000614408 828 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 BX284668.2-205ENST00000619677 828 ntBASIC14.79□□□□□ -0.04
HMGB4Q8WW32 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HMGB4Q8WW32 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 MROH4P-201ENST00000431302 1578 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 AC126365.1-201ENST00000578585 1514 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 RPS9P1-201ENST00000419943 583 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 AL592076.1-201ENST00000424448 303 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 NPM1P43-201ENST00000558669 786 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 MEG3_2.1-201ENST00000611456 105 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 AC092299.1-201ENST00000632679 757 ntBASIC14.78□□□□□ -0.04
HMGB4Q8WW32 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HMGB4Q8WW32 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms