Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 GOLGA6L11P-201ENST00000417252 1298 ntBASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 USP40-206ENST00000443711 628 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 SERBP1P5-201ENST00000510079 1181 ntBASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC025181.2-201ENST00000606994 802 ntBASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AC007386.2-202ENST00000622718 1018 ntTSL 3 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 INVS-201ENST00000262456 2968 ntTSL 5 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
DEPDC4Q8N2C3 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 AC009477.1-201ENST00000452936 217 ntBASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ZNF890P-202ENST00000530367 1156 ntBASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 AL137246.1-201ENST00000607072 977 ntBASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.9□□□□□ -0.18
DEPDC4Q8N2C3 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
DEPDC4Q8N2C3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.9□□□□□ -0.19
DEPDC4Q8N2C3 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.19
DEPDC4Q8N2C3 SFRP1-202ENST00000379845 3873 ntTSL 2 BASIC13.9□□□□□ -0.19
DEPDC4Q8N2C3 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
DEPDC4Q8N2C3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms