Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
CCDC60Q8IWA6 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AC012618.1-201ENST00000461223 412 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 NUP210P1-202ENST00000504322 710 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AF254983.2-201ENST00000612331 135 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CU633904.3-201ENST00000624042 1029 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AC092299.1-201ENST00000632679 757 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 AC068418.2-201ENST00000577309 3703 ntBASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC60Q8IWA6 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 XBP1P1-201ENST00000436573 652 ntBASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 IMP3P2-201ENST00000489760 475 ntBASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 AC245884.6-201ENST00000515672 1067 ntBASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 AL161670.2-201ENST00000557650 1227 ntBASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 NAP1L6-202ENST00000641404 1222 ntBASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC60Q8IWA6 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 KRT8P21-201ENST00000430398 1491 ntBASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CCDC60Q8IWA6 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms