Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.72□□□□□ -0.21
NUP54Q7Z3B4 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC106881.1-201ENST00000605849 3329 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 RPS2P32-201ENST00000439199 892 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC244107.1-201ENST00000442033 332 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 BNIP3P42-201ENST00000454982 569 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AP003171.2-201ENST00000528208 925 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 BNIP3P29-201ENST00000598302 571 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC073413.1-201ENST00000603927 732 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 BX088702.1-201ENST00000610784 235 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 AC011447.5-201ENST00000616168 564 ntBASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NUP54Q7Z3B4 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC13.71□□□□□ -0.22
NUP54Q7Z3B4 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NUP54Q7Z3B4 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms