Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 RPSAP15-201ENST00000448168 861 ntBASIC12.02□□□□□ -0.49
LMO4P61968 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC12.02□□□□□ -0.49
LMO4P61968 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.02□□□□□ -0.49
LMO4P61968 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 AC018635.2-201ENST00000608625 364 ntBASIC12.02□□□□□ -0.49
LMO4P61968 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 KRT18P9-201ENST00000604826 1300 ntBASIC12.02□□□□□ -0.49
LMO4P61968 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC12.02□□□□□ -0.49
LMO4P61968 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
LMO4P61968 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
LMO4P61968 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
LMO4P61968 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.01□□□□□ -0.49
LMO4P61968 AL592076.1-201ENST00000424448 303 ntBASIC12.01□□□□□ -0.49
LMO4P61968 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 NOC2LP1-201ENST00000450578 752 ntBASIC12.01□□□□□ -0.49
LMO4P61968 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 AP000358.1-201ENST00000456260 156 ntBASIC12.01□□□□□ -0.49
LMO4P61968 RN7SL530P-201ENST00000485097 298 ntBASIC12.01□□□□□ -0.49
LMO4P61968 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC12.01□□□□□ -0.49
LMO4P61968 MIR3147-201ENST00000577811 66 ntBASIC12.01□□□□□ -0.49
LMO4P61968 NAT9-224ENST00000583757 583 ntTSL 3 BASIC12.01□□□□□ -0.49
LMO4P61968 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC12.01□□□□□ -0.49
LMO4P61968 AL022334.2-201ENST00000610000 484 ntBASIC12.01□□□□□ -0.49
LMO4P61968 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC12.01□□□□□ -0.49
LMO4P61968 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
LMO4P61968 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
LMO4P61968 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
LMO4P61968 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12□□□□□ -0.49
LMO4P61968 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC12□□□□□ -0.49
LMO4P61968 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12□□□□□ -0.49
LMO4P61968 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
LMO4P61968 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12□□□□□ -0.49
LMO4P61968 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC12□□□□□ -0.49
LMO4P61968 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12□□□□□ -0.49
LMO4P61968 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
LMO4P61968 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12□□□□□ -0.49
LMO4P61968 POR-201ENST00000394893 2532 ntTSL 5 BASIC12□□□□□ -0.49
LMO4P61968 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12□□□□□ -0.49
LMO4P61968 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms