Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 KHSRPP1-201ENST00000427983 1768 ntBASIC16.87■□□□□ 0.29
HMGCS2P54868 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGCS2P54868 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGCS2P54868 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGCS2P54868 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 GAS5-209ENST00000430245 723 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGCS2P54868 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 AC015688.4-201ENST00000580780 1647 ntBASIC16.87■□□□□ 0.29
HMGCS2P54868 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGCS2P54868 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGCS2P54868 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC16.87■□□□□ 0.29
HMGCS2P54868 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGCS2P54868 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 CICP6-201ENST00000457191 2729 ntBASIC16.86■□□□□ 0.29
HMGCS2P54868 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGCS2P54868 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 AP003398.1-201ENST00000531124 318 ntBASIC16.86■□□□□ 0.29
HMGCS2P54868 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGCS2P54868 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGCS2P54868 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HMGCS2P54868 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HMGCS2P54868 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGCS2P54868 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGCS2P54868 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HMGCS2P54868 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGCS2P54868 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HMGCS2P54868 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGCS2P54868 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HMGCS2P54868 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
HMGCS2P54868 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HMGCS2P54868 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGCS2P54868 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC16.85■□□□□ 0.29
HMGCS2P54868 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.85■□□□□ 0.29
HMGCS2P54868 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms