Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
SOX2P48431 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC13.1□□□□□ -0.31
SOX2P48431 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 INE2-201ENST00000630399 1874 ntBASIC13.1□□□□□ -0.31
SOX2P48431 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.1□□□□□ -0.31
SOX2P48431 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
SOX2P48431 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
SOX2P48431 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 AL138799.1-201ENST00000448213 1675 ntBASIC13.09□□□□□ -0.31
SOX2P48431 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.09□□□□□ -0.31
SOX2P48431 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
SOX2P48431 DRD5P1-201ENST00000456605 1438 ntBASIC13.09□□□□□ -0.31
SOX2P48431 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
SOX2P48431 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.09□□□□□ -0.31
SOX2P48431 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.09□□□□□ -0.31
SOX2P48431 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.09□□□□□ -0.31
SOX2P48431 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.09□□□□□ -0.31
SOX2P48431 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.09□□□□□ -0.31
SOX2P48431 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
SOX2P48431 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
SOX2P48431 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
SOX2P48431 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
SOX2P48431 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.31
SOX2P48431 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
SOX2P48431 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.08□□□□□ -0.31
SOX2P48431 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
SOX2P48431 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC13.08□□□□□ -0.32
SOX2P48431 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.08□□□□□ -0.32
SOX2P48431 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.08□□□□□ -0.32
SOX2P48431 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.08□□□□□ -0.32
SOX2P48431 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
SOX2P48431 WRB-204ENST00000398753 699 ntTSL 3 BASIC13.08□□□□□ -0.32
SOX2P48431 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.08□□□□□ -0.32
SOX2P48431 AP000347.1-202ENST00000435868 847 ntBASIC13.08□□□□□ -0.32
SOX2P48431 KLF2P3-201ENST00000451977 1087 ntBASIC13.08□□□□□ -0.32
SOX2P48431 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.08□□□□□ -0.32
SOX2P48431 HLA-J-203ENST00000494367 1087 ntBASIC13.08□□□□□ -0.32
SOX2P48431 MEIS3P1-201ENST00000495167 958 ntBASIC13.08□□□□□ -0.32
SOX2P48431 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC13.08□□□□□ -0.32
SOX2P48431 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
SOX2P48431 AC092337.1-201ENST00000568699 1129 ntBASIC13.08□□□□□ -0.32
SOX2P48431 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms