Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
RFX3P48380 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFX3P48380 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 UCKL1-AS1-201ENST00000623569 3602 ntBASIC14□□□□□ -0.17
RFX3P48380 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 AC023090.2-201ENST00000625182 2110 ntBASIC14□□□□□ -0.17
RFX3P48380 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFX3P48380 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
RFX3P48380 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RFX3P48380 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.99□□□□□ -0.17
RFX3P48380 AC068587.3-201ENST00000526613 355 ntBASIC13.99□□□□□ -0.17
RFX3P48380 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 AL596325.1-201ENST00000563991 1082 ntBASIC13.99□□□□□ -0.17
RFX3P48380 MIR5189-201ENST00000577370 114 ntBASIC13.99□□□□□ -0.17
RFX3P48380 AC132938.2-201ENST00000579188 680 ntBASIC13.99□□□□□ -0.17
RFX3P48380 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC13.99□□□□□ -0.17
RFX3P48380 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
RFX3P48380 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 AL591163.1-201ENST00000641757 987 ntBASIC13.99□□□□□ -0.17
RFX3P48380 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
RFX3P48380 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.99□□□□□ -0.17
RFX3P48380 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
RFX3P48380 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
RFX3P48380 AC018442.1-201ENST00000421439 2061 ntBASIC13.99□□□□□ -0.17
RFX3P48380 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RFX3P48380 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RFX3P48380 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RFX3P48380 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms