Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
COL5A3P25940 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
COL5A3P25940 RN7SL128P-201ENST00000467883 305 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17.95■□□□□ 0.46
COL5A3P25940 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
COL5A3P25940 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 AC011498.7-201ENST00000624986 2027 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 OR7E115P-201ENST00000382617 1024 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC17.95■□□□□ 0.46
COL5A3P25940 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.95■□□□□ 0.46
COL5A3P25940 AC092903.1-201ENST00000466506 262 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 RN7SL375P-201ENST00000492442 298 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.95■□□□□ 0.46
COL5A3P25940 AL049840.2-201ENST00000602722 535 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 GGNBP1-204ENST00000613113 887 ntBASIC17.95■□□□□ 0.46
COL5A3P25940 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC17.95■□□□□ 0.46
COL5A3P25940 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.95■□□□□ 0.46
COL5A3P25940 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.95■□□□□ 0.46
COL5A3P25940 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL5A3P25940 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.94■□□□□ 0.46
COL5A3P25940 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.94■□□□□ 0.46
COL5A3P25940 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
COL5A3P25940 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17.94■□□□□ 0.46
COL5A3P25940 AL357373.1-201ENST00000394974 322 ntBASIC17.94■□□□□ 0.46
COL5A3P25940 AP000354.1-201ENST00000396982 456 ntBASIC17.94■□□□□ 0.46
COL5A3P25940 NRADDP-201ENST00000437305 691 ntBASIC17.94■□□□□ 0.46
COL5A3P25940 ZNF877P-201ENST00000437614 612 ntBASIC17.94■□□□□ 0.46
COL5A3P25940 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC17.94■□□□□ 0.46
COL5A3P25940 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC17.94■□□□□ 0.46
COL5A3P25940 BATF-202ENST00000555504 361 ntTSL 2 BASIC17.94■□□□□ 0.46
COL5A3P25940 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL5A3P25940 AC126755.5-201ENST00000622756 267 ntBASIC17.94■□□□□ 0.46
COL5A3P25940 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.94■□□□□ 0.46
COL5A3P25940 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
COL5A3P25940 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL5A3P25940 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL5A3P25940 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL5A3P25940 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL5A3P25940 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
COL5A3P25940 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL5A3P25940 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.93■□□□□ 0.46
COL5A3P25940 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
COL5A3P25940 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.93■□□□□ 0.46
COL5A3P25940 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.93■□□□□ 0.46
COL5A3P25940 AL359219.1-201ENST00000556311 934 ntBASIC17.93■□□□□ 0.46
COL5A3P25940 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC17.93■□□□□ 0.46
COL5A3P25940 AC007193.3-201ENST00000598616 188 ntTSL 3 BASIC17.93■□□□□ 0.46
COL5A3P25940 CASP16P-204ENST00000635032 809 ntBASIC17.93■□□□□ 0.46
COL5A3P25940 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL5A3P25940 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms