Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.93□□□□□ -0.18
LDB3O75112 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 AC023908.3-201ENST00000564211 3047 ntBASIC13.93□□□□□ -0.18
LDB3O75112 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.93□□□□□ -0.18
LDB3O75112 CHMP1AP1-201ENST00000445563 662 ntBASIC13.93□□□□□ -0.18
LDB3O75112 AL355994.2-201ENST00000447882 704 ntBASIC13.93□□□□□ -0.18
LDB3O75112 HIST2H2BB-201ENST00000449108 381 ntBASIC13.93□□□□□ -0.18
LDB3O75112 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.93□□□□□ -0.18
LDB3O75112 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 DUX4L45-201ENST00000566406 1057 ntBASIC13.93□□□□□ -0.18
LDB3O75112 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.93□□□□□ -0.18
LDB3O75112 AL359881.2-201ENST00000602973 570 ntBASIC13.93□□□□□ -0.18
LDB3O75112 BX088702.1-201ENST00000610784 235 ntBASIC13.93□□□□□ -0.18
LDB3O75112 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
LDB3O75112 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.93□□□□□ -0.18
LDB3O75112 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LDB3O75112 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
LDB3O75112 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LDB3O75112 AL136379.1-201ENST00000623471 2642 ntBASIC13.93□□□□□ -0.18
LDB3O75112 AL023775.1-201ENST00000454907 1746 ntBASIC13.93□□□□□ -0.18
LDB3O75112 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.92□□□□□ -0.18
LDB3O75112 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.92□□□□□ -0.18
LDB3O75112 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 AC006504.5-208ENST00000588784 2401 ntBASIC13.92□□□□□ -0.18
LDB3O75112 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.92□□□□□ -0.18
LDB3O75112 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
LDB3O75112 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.92□□□□□ -0.18
LDB3O75112 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.92□□□□□ -0.18
LDB3O75112 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.92□□□□□ -0.18
LDB3O75112 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.92□□□□□ -0.18
LDB3O75112 AL136301.1-201ENST00000615830 422 ntBASIC13.92□□□□□ -0.18
LDB3O75112 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 AC015688.4-201ENST00000580780 1647 ntBASIC13.92□□□□□ -0.18
LDB3O75112 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
LDB3O75112 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 AGGF1P1-201ENST00000509500 2073 ntBASIC13.92□□□□□ -0.18
LDB3O75112 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.92□□□□□ -0.18
LDB3O75112 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LDB3O75112 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
LDB3O75112 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LDB3O75112 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.91□□□□□ -0.18
LDB3O75112 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms