Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SPDYE17-201ENST00000412399 783 ntBASIC10.87□□□□□ -0.67
SMKR1H3BMG3 FAM58CP-201ENST00000435741 640 ntBASIC10.87□□□□□ -0.67
SMKR1H3BMG3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC034105.1-201ENST00000563488 319 ntBASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AP001005.1-201ENST00000571755 1248 ntBASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC026120.1-201ENST00000611536 926 ntBASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 GPR39-203ENST00000622084 900 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SON-203ENST00000381679 7860 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 C2-206ENST00000442278 2434 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
SMKR1H3BMG3 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 RPS19-201ENST00000221975 500 ntTSL 3 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 MRPL3P1-201ENST00000400109 1033 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 ADH5P3-201ENST00000433842 1137 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 MTND6P24-201ENST00000440466 518 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 RNA5SP419-201ENST00000515908 135 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 KRT8P23-201ENST00000560090 1207 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AC074044.1-201ENST00000609673 707 ntBASIC10.86□□□□□ -0.67
SMKR1H3BMG3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
SMKR1H3BMG3 AC092902.6-201ENST00000641783 218 ntBASIC10.86□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms