Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 AC007431.3-201ENST00000623221 587 ntBASIC14.68□□□□□ -0.06
SSU72Q9NP77 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 OS9-218ENST00000551035 2246 ntTSL 2 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SSU72Q9NP77 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SSU72Q9NP77 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 CNN2P2-201ENST00000443536 909 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 CNN2P3-201ENST00000450201 906 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 HLA-J-203ENST00000494367 1087 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 SRD5A3P1-201ENST00000603021 949 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 AL136317.3-201ENST00000618497 906 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 AC004840.1-201ENST00000636359 365 ntBASIC14.67□□□□□ -0.06
SSU72Q9NP77 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.67□□□□□ -0.06
SSU72Q9NP77 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SSU72Q9NP77 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 MARK2P9-201ENST00000430958 1727 ntBASIC14.66□□□□□ -0.06
SSU72Q9NP77 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 RN7SKP230-201ENST00000365642 335 ntBASIC14.66□□□□□ -0.06
SSU72Q9NP77 WRB-204ENST00000398753 699 ntTSL 3 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 RN7SL399P-201ENST00000471648 279 ntBASIC14.66□□□□□ -0.06
SSU72Q9NP77 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 BRI3BPP1-201ENST00000594224 787 ntBASIC14.66□□□□□ -0.06
SSU72Q9NP77 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SSU72Q9NP77 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.66□□□□□ -0.06
SSU72Q9NP77 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
SSU72Q9NP77 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms