Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 MROH4P-201ENST00000431302 1578 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 BANP-203ENST00000393207 2438 ntTSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AC232323.1-201ENST00000540724 2099 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TMEM198B-204ENST00000484016 896 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 MARK2P5-201ENST00000507649 634 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 MIR3907-201ENST00000579424 151 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 MIR4706-201ENST00000582134 82 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AC090164.2-201ENST00000611487 516 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AL136295.7-201ENST00000619226 1200 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 AL359258.3-201ENST00000622910 2331 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 E2F3P2-201ENST00000447755 1422 ntBASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.82□□□□□ -0.04
TM9SF3Q9HD45 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC020910.5-201ENST00000623668 1865 ntBASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 MAGEA5-201ENST00000446757 942 ntBASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 MPRIPP1-201ENST00000452433 1089 ntBASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AL161670.2-201ENST00000557650 1227 ntBASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 DUX4L46-201ENST00000566845 751 ntBASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 RPS15-202ENST00000585665 467 ntTSL 3 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC14.81□□□□□ -0.04
TM9SF3Q9HD45 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TM9SF3Q9HD45 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms