Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
UPF3BQ9BZI7 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
UPF3BQ9BZI7 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
UPF3BQ9BZI7 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
UPF3BQ9BZI7 AL138725.1-201ENST00000407347 1314 ntBASIC17.71■□□□□ 0.42
UPF3BQ9BZI7 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.71■□□□□ 0.42
UPF3BQ9BZI7 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.71■□□□□ 0.42
UPF3BQ9BZI7 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
UPF3BQ9BZI7 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 AC131206.1-201ENST00000538078 1211 ntBASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 TP53TG3HP-202ENST00000569755 579 ntBASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 CLUHP2-201ENST00000426660 1303 ntBASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
UPF3BQ9BZI7 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 TLE1P1-201ENST00000422965 589 ntBASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 RPS2P32-201ENST00000439199 892 ntBASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 AC145423.3-201ENST00000615987 467 ntBASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 MYADML-201ENST00000474610 2147 ntBASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
UPF3BQ9BZI7 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
UPF3BQ9BZI7 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms