Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC104457.1-201ENST00000401024 814 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 AL133466.1-201ENST00000447582 150 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 IMP3P2-201ENST00000489760 475 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 TUBBP5-203ENST00000508529 1334 ntBASIC16.11■□□□□ 0.17
VPS52Q8N1B4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.11■□□□□ 0.17
VPS52Q8N1B4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 KRT8P19-201ENST00000551916 1455 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AL157414.3-201ENST00000624276 1954 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AL008707.1-201ENST00000422498 534 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 Z97180.1-201ENST00000445173 988 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RNMTL1P1-201ENST00000454103 560 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RN7SL11P-201ENST00000471305 293 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AC026434.2-201ENST00000506094 1078 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RN7SL774P-201ENST00000577467 290 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AC091544.8-201ENST00000619490 361 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AC022748.3-201ENST00000621828 275 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
VPS52Q8N1B4 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.1■□□□□ 0.17
VPS52Q8N1B4 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 C8orf49-201ENST00000525043 1968 ntBASIC16.09■□□□□ 0.17
VPS52Q8N1B4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
VPS52Q8N1B4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms