Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 VENTXP4-201ENST00000449029 958 ntBASIC19.66■□□□□ 0.74
NPHP3Q7Z494 AL451000.1-201ENST00000451300 1186 ntBASIC19.66■□□□□ 0.74
NPHP3Q7Z494 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 MBP-238ENST00000580402 915 ntTSL 5 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 AC021016.3-201ENST00000608367 477 ntBASIC19.66■□□□□ 0.74
NPHP3Q7Z494 ENPP7P8-202ENST00000527856 1345 ntBASIC19.66■□□□□ 0.74
NPHP3Q7Z494 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NPHP3Q7Z494 AC026691.1-201ENST00000602502 2017 ntBASIC19.65■□□□□ 0.74
NPHP3Q7Z494 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 AF274858.1-201ENST00000406288 372 ntBASIC19.65■□□□□ 0.74
NPHP3Q7Z494 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 AC006529.1-201ENST00000459978 637 ntBASIC19.65■□□□□ 0.74
NPHP3Q7Z494 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 SNORD3B-1-201ENST00000577988 758 ntBASIC19.65■□□□□ 0.74
NPHP3Q7Z494 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 GAS7-216ENST00000583882 553 ntTSL 5 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
NPHP3Q7Z494 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP3Q7Z494 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP3Q7Z494 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP3Q7Z494 AC020658.6-201ENST00000623564 1870 ntBASIC19.64■□□□□ 0.74
NPHP3Q7Z494 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC19.64■□□□□ 0.74
NPHP3Q7Z494 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
NPHP3Q7Z494 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 NME6-208ENST00000435684 599 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 RPS23-207ENST00000511844 530 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 COX5A-205ENST00000568517 582 ntTSL 3 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 NAV1-210ENST00000593583 726 ntBASIC19.64■□□□□ 0.73
NPHP3Q7Z494 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC19.64■□□□□ 0.73
NPHP3Q7Z494 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC19.63■□□□□ 0.73
NPHP3Q7Z494 AL929302.1-201ENST00000426556 871 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms