Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 HIST2H2BB-201ENST00000449108 381 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC104073.2-201ENST00000453737 312 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AP002803.1-201ENST00000528836 498 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 RN7SL163P-201ENST00000583100 276 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 YRDCP1-201ENST00000621419 643 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC004923.1-202ENST00000642106 209 ntBASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.29□□□□□ -0.12
COL28A1Q2UY09 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC012362.1-201ENST00000434906 739 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC100850.1-201ENST00000506768 649 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC090857.1-201ENST00000527400 390 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CSH2-206ENST00000560142 749 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 MIR4649-201ENST00000582839 64 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 SSR4P1-203ENST00000599569 2260 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 BNIP3P13-201ENST00000599968 566 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC103810.10-201ENST00000606504 343 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 AC074138.1-201ENST00000611182 1303 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ZACNP1-201ENST00000612259 710 ntBASIC14.28□□□□□ -0.12
COL28A1Q2UY09 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.28□□□□□ -0.12
COL28A1Q2UY09 ENPP7P14-201ENST00000621765 1040 ntBASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms