Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 GOSR2-209ENST00000575949 1444 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 BX679664.3-201ENST00000414070 555 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 AC113935.1-201ENST00000471722 555 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC10.24□□□□□ -0.77
PRKDCP78527 MIR5193-201ENST00000584510 109 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC10.24□□□□□ -0.77
PRKDCP78527 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC10.24□□□□□ -0.77
PRKDCP78527 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
PRKDCP78527 F10-203ENST00000409306 1450 ntTSL 3 BASIC10.24□□□□□ -0.77
PRKDCP78527 GOLGA8UP-201ENST00000527159 1755 ntBASIC10.24□□□□□ -0.77
PRKDCP78527 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
PRKDCP78527 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
PRKDCP78527 MPV17-209ENST00000405983 859 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC10.23□□□□□ -0.77
PRKDCP78527 HNRNPA1P73-201ENST00000446472 928 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 AC009812.1-201ENST00000605948 1059 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 BX510359.7-201ENST00000619819 630 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 AC012513.2-201ENST00000441511 1137 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 PRDX3P2-201ENST00000447051 611 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 AP005264.5-201ENST00000590066 467 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 LTB4R2-202ENST00000528054 3092 ntBASIC10.23□□□□□ -0.77
PRKDCP78527 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC10.23□□□□□ -0.77
PRKDCP78527 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC10.23□□□□□ -0.77
PRKDCP78527 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 WASH5P-206ENST00000632506 1147 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
PRKDCP78527 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
PRKDCP78527 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC10.23□□□□□ -0.77
PRKDCP78527 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 LINC02449-201ENST00000304751 795 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC10.22□□□□□ -0.77
PRKDCP78527 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC10.22□□□□□ -0.77
PRKDCP78527 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC10.22□□□□□ -0.77
PRKDCP78527 PMM1-201ENST00000216259 1298 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
PRKDCP78527 AC007622.1-201ENST00000488371 535 ntBASIC10.22□□□□□ -0.77
PRKDCP78527 RPSAP70-201ENST00000504462 864 ntBASIC10.22□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms