Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 KRT18P25-201ENST00000508931 1278 ntBASIC14.34□□□□□ -0.11
FOXA1P55317 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA1P55317 AC103988.2-201ENST00000561804 725 ntBASIC14.34□□□□□ -0.11
FOXA1P55317 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 AC138696.2-201ENST00000607376 223 ntBASIC14.34□□□□□ -0.11
FOXA1P55317 AC004233.3-201ENST00000607794 1269 ntBASIC14.34□□□□□ -0.11
FOXA1P55317 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA1P55317 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
FOXA1P55317 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.33□□□□□ -0.11
FOXA1P55317 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.33□□□□□ -0.12
FOXA1P55317 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
FOXA1P55317 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
FOXA1P55317 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 POM121L8P-201ENST00000417732 1281 ntBASIC14.33□□□□□ -0.12
FOXA1P55317 POM121L9P-203ENST00000441984 1285 ntBASIC14.33□□□□□ -0.12
FOXA1P55317 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.33□□□□□ -0.12
FOXA1P55317 AJ011932.1-201ENST00000621707 465 ntBASIC14.33□□□□□ -0.12
FOXA1P55317 AP001002.3-201ENST00000623482 206 ntBASIC14.33□□□□□ -0.12
FOXA1P55317 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 AL365209.1-201ENST00000624418 6473 ntBASIC14.33□□□□□ -0.12
FOXA1P55317 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
FOXA1P55317 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
FOXA1P55317 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
FOXA1P55317 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
FOXA1P55317 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 AC139712.1-201ENST00000378256 1875 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
FOXA1P55317 MIR770-201ENST00000390219 98 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
FOXA1P55317 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
FOXA1P55317 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.32□□□□□ -0.12
FOXA1P55317 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.32□□□□□ -0.12
FOXA1P55317 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.32□□□□□ -0.12
FOXA1P55317 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 LINC02560-201ENST00000596379 459 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.32□□□□□ -0.12
FOXA1P55317 MIR6074-201ENST00000612054 107 ntBASIC14.32□□□□□ -0.12
FOXA1P55317 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.32□□□□□ -0.12
FOXA1P55317 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms