Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.32■□□□□ 0.04
NEK3P51956 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
NEK3P51956 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NEK3P51956 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.32■□□□□ 0.04
NEK3P51956 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
NEK3P51956 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.31■□□□□ 0.04
NEK3P51956 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 AL590640.2-201ENST00000457038 527 ntBASIC15.31■□□□□ 0.04
NEK3P51956 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 AC022616.1-201ENST00000518688 554 ntBASIC15.31■□□□□ 0.04
NEK3P51956 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.31■□□□□ 0.04
NEK3P51956 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.31■□□□□ 0.04
NEK3P51956 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 AL583810.1-201ENST00000553344 1045 ntBASIC15.31■□□□□ 0.04
NEK3P51956 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.31■□□□□ 0.04
NEK3P51956 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
NEK3P51956 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.31■□□□□ 0.04
NEK3P51956 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.31■□□□□ 0.04
NEK3P51956 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.31■□□□□ 0.04
NEK3P51956 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.31■□□□□ 0.04
NEK3P51956 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
NEK3P51956 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.31■□□□□ 0.04
NEK3P51956 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
NEK3P51956 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
NEK3P51956 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 TPM3P8-201ENST00000330554 643 ntBASIC15.3■□□□□ 0.04
NEK3P51956 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
NEK3P51956 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
NEK3P51956 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.3■□□□□ 0.04
NEK3P51956 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms