Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 AL391825.1-201ENST00000457671 1364 ntBASIC11.36□□□□□ -0.59
HLA-DMBP28068 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
HLA-DMBP28068 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 OS9-207ENST00000439210 1946 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 MEP1AP4-201ENST00000423244 1087 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 WBP2-203ENST00000433525 928 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 API5-211ENST00000534695 560 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AL596325.1-201ENST00000563991 1082 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 TP53TG3HP-202ENST00000569755 579 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 RPS15-202ENST00000585665 467 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AL137784.3-201ENST00000623858 2288 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 INTS4P2-202ENST00000614726 2019 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 AC092135.3-201ENST00000624151 1846 ntBASIC11.35□□□□□ -0.59
HLA-DMBP28068 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC11.35□□□□□ -0.59
HLA-DMBP28068 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.35□□□□□ -0.59
HLA-DMBP28068 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms