Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 TUBB1P2-201ENST00000422712 1306 ntBASIC14.42□□□□□ -0.1
LDLRP01130 TUBB1P1-201ENST00000503144 1300 ntBASIC14.42□□□□□ -0.1
LDLRP01130 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.42□□□□□ -0.1
LDLRP01130 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
LDLRP01130 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 BRWD1P1-201ENST00000401091 371 ntBASIC14.42□□□□□ -0.1
LDLRP01130 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.42□□□□□ -0.1
LDLRP01130 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.42□□□□□ -0.1
LDLRP01130 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.42□□□□□ -0.1
LDLRP01130 TPI1-206ENST00000488464 791 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 USP32P1-208ENST00000506594 1164 ntBASIC14.42□□□□□ -0.1
LDLRP01130 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC14.42□□□□□ -0.1
LDLRP01130 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 RETN-203ENST00000629642 400 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 AC107918.4-201ENST00000641966 3141 ntBASIC14.42□□□□□ -0.1
LDLRP01130 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.42□□□□□ -0.1
LDLRP01130 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.42□□□□□ -0.1
LDLRP01130 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LDLRP01130 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
LDLRP01130 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.41□□□□□ -0.1
LDLRP01130 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
LDLRP01130 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
LDLRP01130 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.41□□□□□ -0.1
LDLRP01130 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 AZGP1P1-201ENST00000411909 902 ntBASIC14.41□□□□□ -0.1
LDLRP01130 SPDYE17-201ENST00000412399 783 ntBASIC14.41□□□□□ -0.1
LDLRP01130 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.41□□□□□ -0.1
LDLRP01130 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.41□□□□□ -0.1
LDLRP01130 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.41□□□□□ -0.1
LDLRP01130 CTBP2P5-201ENST00000454986 1264 ntBASIC14.41□□□□□ -0.1
LDLRP01130 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LDLRP01130 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.41□□□□□ -0.1
LDLRP01130 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LDLRP01130 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.41□□□□□ -0.1
LDLRP01130 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LDLRP01130 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LDLRP01130 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms