Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
CACNA1FO60840 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC18.21■□□□□ 0.5
CACNA1FO60840 BANF1P3-201ENST00000412556 261 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.21■□□□□ 0.5
CACNA1FO60840 IMP3P2-201ENST00000489760 475 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 AC005740.1-201ENST00000515639 522 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.5
CACNA1FO60840 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC18.21■□□□□ 0.5
CACNA1FO60840 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC18.21■□□□□ 0.5
CACNA1FO60840 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
CACNA1FO60840 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC18.21■□□□□ 0.5
CACNA1FO60840 AC138894.2-201ENST00000602838 371 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 AL109837.1-201ENST00000603272 613 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 AC079336.7-201ENST00000623428 1078 ntBASIC18.21■□□□□ 0.5
CACNA1FO60840 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC18.2■□□□□ 0.5
CACNA1FO60840 MARK2P16-201ENST00000605714 1723 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SHMT1P1-201ENST00000419974 1312 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC18.2■□□□□ 0.5
CACNA1FO60840 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CACNA1FO60840 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC18.2■□□□□ 0.5
CACNA1FO60840 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 MIR557-201ENST00000385239 98 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
CACNA1FO60840 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.2■□□□□ 0.5
CACNA1FO60840 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC18.2■□□□□ 0.5
CACNA1FO60840 KRT18P15-201ENST00000458108 1291 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 AC008723.1-201ENST00000506922 207 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 RN7SL455P-201ENST00000580629 282 ntBASIC18.2■□□□□ 0.5
CACNA1FO60840 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CACNA1FO60840 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC18.2■□□□□ 0.5
CACNA1FO60840 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
CACNA1FO60840 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CACNA1FO60840 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC18.2■□□□□ 0.5
CACNA1FO60840 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CACNA1FO60840 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.2■□□□□ 0.5
CACNA1FO60840 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 CMC1-204ENST00000423894 549 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC18.19■□□□□ 0.5
CACNA1FO60840 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 RN7SL769P-201ENST00000469386 295 ntBASIC18.19■□□□□ 0.5
CACNA1FO60840 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC18.19■□□□□ 0.5
CACNA1FO60840 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 AL139158.3-201ENST00000641212 1562 ntBASIC18.19■□□□□ 0.5
CACNA1FO60840 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 FAM90A2P-201ENST00000511144 1395 ntBASIC18.19■□□□□ 0.5
CACNA1FO60840 FAM90A25P-201ENST00000528404 1395 ntBASIC18.19■□□□□ 0.5
CACNA1FO60840 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CACNA1FO60840 AL512306.1-201ENST00000432698 848 ntBASIC18.19■□□□□ 0.5
CACNA1FO60840 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.19■□□□□ 0.5
CACNA1FO60840 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC18.19■□□□□ 0.5
CACNA1FO60840 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.19■□□□□ 0.5
CACNA1FO60840 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC18.19■□□□□ 0.5
CACNA1FO60840 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.19■□□□□ 0.5
CACNA1FO60840 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CACNA1FO60840 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.19■□□□□ 0.5
CACNA1FO60840 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC18.18■□□□□ 0.5
CACNA1FO60840 DDC-213ENST00000617822 1809 ntTSL 3 BASIC18.18■□□□□ 0.5
CACNA1FO60840 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CACNA1FO60840 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC18.18■□□□□ 0.5
CACNA1FO60840 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CACNA1FO60840 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms