Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC011498.7-201ENST00000624986 2027 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC023310.3-201ENST00000557027 670 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC100756.1-201ENST00000562736 682 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC104794.3-201ENST00000566840 1248 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC138749.3-201ENST00000567691 622 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC116165.1-201ENST00000611806 668 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC215219.1-201ENST00000400706 1817 ntBASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
TRIM49D1C9J1S8 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 TPRX2P-201ENST00000535362 881 ntBASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 BRI3BPP1-201ENST00000594224 787 ntBASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AL390955.2-201ENST00000603032 514 ntBASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AL390754.1-201ENST00000619088 582 ntBASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AC007431.3-201ENST00000623221 587 ntBASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM49D1C9J1S8 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 AC022144.1-201ENST00000602255 1580 ntBASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM49D1C9J1S8 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms