Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 KRT18P46-201ENST00000435568 1279 ntBASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 RPL3P5-201ENST00000441645 1232 ntBASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL118522.1-201ENST00000611368 560 ntBASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 REXO1L4P-201ENST00000605109 1937 ntBASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 AL136172.1-201ENST00000598590 1394 ntBASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ZC3H4Q9UPT8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 AC012617.1-201ENST00000586345 797 ntTSL 2 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 NAV1-210ENST00000593583 726 ntBASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
ZC3H4Q9UPT8 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
ZC3H4Q9UPT8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms