Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 C1R-201ENST00000535233 2211 ntTSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ZBTB12BP-201ENST00000314232 1122 ntBASIC13.19□□□□□ -0.3
SKA3Q8IX90 AC016694.1-201ENST00000434179 700 ntBASIC13.19□□□□□ -0.3
SKA3Q8IX90 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 RN7SL48P-201ENST00000579283 293 ntBASIC13.19□□□□□ -0.3
SKA3Q8IX90 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ETV2-208ENST00000621247 941 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ENPP7P14-201ENST00000621765 1040 ntBASIC13.19□□□□□ -0.3
SKA3Q8IX90 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
SKA3Q8IX90 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SKA3Q8IX90 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC063926.2-201ENST00000623766 1308 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 C2orf27AP3-201ENST00000434123 579 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC245100.3-201ENST00000441281 285 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC007551.1-201ENST00000457394 519 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AC244669.2-201ENST00000612320 853 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 AL354718.3-201ENST00000616414 581 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 CR382287.1-201ENST00000623954 586 ntBASIC13.18□□□□□ -0.3
SKA3Q8IX90 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.18□□□□□ -0.3
SKA3Q8IX90 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SKA3Q8IX90 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms