Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AL020989.1-201ENST00000422979 469 ntBASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC110285.5-201ENST00000611501 352 ntBASIC9.15□□□□□ -0.94
LINC00643Q86TS7 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 IKZF4-203ENST00000547167 2539 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 FBXO44-202ENST00000251547 2903 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 KCTD10-201ENST00000228495 4163 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 PCDHGB1-201ENST00000523390 4590 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 CLEC4F-201ENST00000272367 2475 ntAPPRIS P3 TSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 AC026797.1-201ENST00000624837 2869 ntBASIC9.15□□□□□ -0.94
LINC00643Q86TS7 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 BMP2-201ENST00000378827 3601 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
LINC00643Q86TS7 DNMT3A-201ENST00000264709 9501 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 TREH-201ENST00000264029 2771 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 KRT17P7-202ENST00000582261 2334 ntTSL 5 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 PPFIA4-201ENST00000272198 5045 ntAPPRIS ALT2 TSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 LUZP1-201ENST00000302291 8898 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 PCDHGA4-202ENST00000612927 2691 ntAPPRIS ALT2 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 NRAP-201ENST00000359988 5580 ntAPPRIS P3 TSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 ERBB2-219ENST00000584601 4792 ntTSL 2 BASIC9.15□□□□□ -0.95
LINC00643Q86TS7 SLFNL1-202ENST00000359345 4310 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 PHF21B-203ENST00000403565 3586 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 ALOXE3-201ENST00000318227 3053 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 RIC8A-203ENST00000526104 3703 ntAPPRIS ALT1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 UBR7-201ENST00000013070 3694 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 IRS4-201ENST00000372129 3928 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 LINC01165-201ENST00000445190 1623 ntBASIC9.14□□□□□ -0.95
LINC00643Q86TS7 PLEC-201ENST00000322810 15249 ntAPPRIS P4 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 FERMT2-202ENST00000343279 3247 ntTSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CCR12P-201ENST00000446203 998 ntBASIC9.14□□□□□ -0.95
LINC00643Q86TS7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 OLFML2B-201ENST00000294794 3160 ntAPPRIS P3 TSL 1 (best) BASIC9.14□□□□□ -0.95
LINC00643Q86TS7 MADD-207ENST00000402799 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC9.14□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms