Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 AC126177.1-201ENST00000547829 2218 ntBASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SHROOM1Q2M3G4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 TSPY25P-201ENST00000429463 745 ntBASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 CFL1-206ENST00000527344 962 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PGAM1P5-201ENST00000548011 764 ntBASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MIR4522-201ENST00000584932 87 ntBASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.11■□□□□ 0.33
SHROOM1Q2M3G4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AC023157.3-201ENST00000619086 2088 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AL512430.1-201ENST00000392575 860 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AC078991.1-201ENST00000437297 610 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AC104784.1-201ENST00000473096 294 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AC008723.1-201ENST00000506922 207 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 NPM1P43-201ENST00000558669 786 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AC051619.9-201ENST00000623237 597 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 FAM90A2P-201ENST00000511144 1395 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 FAM90A25P-201ENST00000528404 1395 ntBASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM1Q2M3G4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM1Q2M3G4 MTHFR-210ENST00000641407 2387 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms