Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
FOXA1P55317 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
FOXA1P55317 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 PGGT1BP2-201ENST00000398621 1028 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.36□□□□□ -0.11
FOXA1P55317 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.36□□□□□ -0.11
FOXA1P55317 GCOM2-201ENST00000509133 1104 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.36□□□□□ -0.11
FOXA1P55317 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA1P55317 AC008494.3-201ENST00000606615 944 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 WFDC1-204ENST00000613603 549 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 CLUHP2-201ENST00000426660 1303 ntBASIC14.36□□□□□ -0.11
FOXA1P55317 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
FOXA1P55317 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA1P55317 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 AC097376.2-205ENST00000610159 5334 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA1P55317 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
FOXA1P55317 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA1P55317 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
FOXA1P55317 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA1P55317 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA1P55317 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA1P55317 TSPY16P-201ENST00000449843 468 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 AC022137.2-201ENST00000503482 481 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
FOXA1P55317 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA1P55317 ENPP7P5-201ENST00000541031 1031 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 AP001063.1-201ENST00000568332 529 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA1P55317 CU634019.7-201ENST00000624153 1185 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 FP236241.2-201ENST00000624906 1185 ntBASIC14.35□□□□□ -0.11
FOXA1P55317 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
FOXA1P55317 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA1P55317 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
FOXA1P55317 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA1P55317 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA1P55317 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 AC087499.6-201ENST00000411576 835 ntBASIC14.34□□□□□ -0.11
FOXA1P55317 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA1P55317 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA1P55317 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms