Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH11P55287 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.68□□□□□ -0.22
CDH11P55287 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CDH11P55287 AC011474.4-201ENST00000623523 2076 ntBASIC13.68□□□□□ -0.22
CDH11P55287 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CDH11P55287 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC13.67□□□□□ -0.22
CDH11P55287 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.67□□□□□ -0.22
CDH11P55287 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.67□□□□□ -0.22
CDH11P55287 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.67□□□□□ -0.22
CDH11P55287 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.67□□□□□ -0.22
CDH11P55287 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.67□□□□□ -0.22
CDH11P55287 ELK1P1-201ENST00000485699 580 ntBASIC13.67□□□□□ -0.22
CDH11P55287 FADS2-205ENST00000517839 469 ntTSL 3 BASIC13.67□□□□□ -0.22
CDH11P55287 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC13.67□□□□□ -0.22
CDH11P55287 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CDH11P55287 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.67□□□□□ -0.22
CDH11P55287 RARRES2P5-201ENST00000564013 466 ntBASIC13.67□□□□□ -0.22
CDH11P55287 IGHV3-72-202ENST00000621503 303 ntBASIC13.67□□□□□ -0.22
CDH11P55287 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 MST1P2-201ENST00000457982 2291 ntBASIC13.67□□□□□ -0.22
CDH11P55287 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 AC018665.1-201ENST00000622927 1362 ntBASIC13.67□□□□□ -0.22
CDH11P55287 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CDH11P55287 CLK3P2-201ENST00000427566 1453 ntBASIC13.67□□□□□ -0.22
CDH11P55287 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC13.67□□□□□ -0.22
CDH11P55287 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CDH11P55287 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 MBLAC2-202ENST00000514906 1936 ntBASIC13.66□□□□□ -0.22
CDH11P55287 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.66□□□□□ -0.22
CDH11P55287 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 NEU3-203ENST00000529024 581 ntTSL 3 BASIC13.66□□□□□ -0.22
CDH11P55287 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.66□□□□□ -0.22
CDH11P55287 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.66□□□□□ -0.22
CDH11P55287 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CDH11P55287 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.66□□□□□ -0.22
CDH11P55287 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CDH11P55287 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms