Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.93■□□□□ 0.14
VCPP55072 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
VCPP55072 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 AC005912.2-201ENST00000619492 2400 ntBASIC15.93■□□□□ 0.14
VCPP55072 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
VCPP55072 AC140479.7-201ENST00000636301 2332 ntBASIC15.93■□□□□ 0.14
VCPP55072 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.92■□□□□ 0.14
VCPP55072 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
VCPP55072 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.92■□□□□ 0.14
VCPP55072 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 SNX18-202ENST00000343017 3140 ntBASIC15.92■□□□□ 0.14
VCPP55072 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 AC234644.1-201ENST00000406065 370 ntBASIC15.92■□□□□ 0.14
VCPP55072 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
VCPP55072 HSPB1P2-201ENST00000448722 546 ntBASIC15.92■□□□□ 0.14
VCPP55072 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VCPP55072 RN7SL11P-201ENST00000471305 293 ntBASIC15.92■□□□□ 0.14
VCPP55072 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.92■□□□□ 0.14
VCPP55072 AC044849.1-201ENST00000519737 1188 ntBASIC15.92■□□□□ 0.14
VCPP55072 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
VCPP55072 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
VCPP55072 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 AC145423.3-201ENST00000615987 467 ntBASIC15.92■□□□□ 0.14
VCPP55072 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.92■□□□□ 0.14
VCPP55072 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.92■□□□□ 0.14
VCPP55072 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCPP55072 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC15.92■□□□□ 0.14
VCPP55072 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 RNU1-114P-201ENST00000365297 166 ntBASIC15.91■□□□□ 0.14
VCPP55072 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC15.91■□□□□ 0.14
VCPP55072 AC243961.1-201ENST00000432559 384 ntTSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.91■□□□□ 0.14
VCPP55072 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 SUPT4H1P2-201ENST00000501248 353 ntBASIC15.91■□□□□ 0.14
VCPP55072 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.91■□□□□ 0.14
VCPP55072 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC15.91■□□□□ 0.14
VCPP55072 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCPP55072 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.91■□□□□ 0.14
VCPP55072 RN7SL574P-201ENST00000581512 297 ntBASIC15.91■□□□□ 0.14
VCPP55072 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.91■□□□□ 0.14
VCPP55072 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.91■□□□□ 0.14
VCPP55072 AP000346.4-201ENST00000614827 381 ntBASIC15.91■□□□□ 0.14
VCPP55072 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VCPP55072 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms