Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
MRE11P49959 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
MRE11P49959 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.4■□□□□ 0.38
MRE11P49959 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 AC069120.2-201ENST00000524091 540 ntBASIC17.4■□□□□ 0.38
MRE11P49959 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 AC109635.5-201ENST00000533593 962 ntBASIC17.4■□□□□ 0.38
MRE11P49959 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.4■□□□□ 0.38
MRE11P49959 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
MRE11P49959 CICP16-201ENST00000502609 2813 ntBASIC17.4■□□□□ 0.38
MRE11P49959 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
MRE11P49959 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MRE11P49959 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MRE11P49959 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
MRE11P49959 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.39■□□□□ 0.38
MRE11P49959 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
MRE11P49959 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.38
MRE11P49959 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.39■□□□□ 0.38
MRE11P49959 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.39■□□□□ 0.38
MRE11P49959 TSN-212ENST00000536142 3328 ntTSL 2 BASIC17.39■□□□□ 0.38
MRE11P49959 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC17.39■□□□□ 0.38
MRE11P49959 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC17.39■□□□□ 0.37
MRE11P49959 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.39■□□□□ 0.37
MRE11P49959 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
MRE11P49959 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC17.39■□□□□ 0.37
MRE11P49959 FAM58DP-201ENST00000428076 619 ntBASIC17.39■□□□□ 0.37
MRE11P49959 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.39■□□□□ 0.37
MRE11P49959 SPDYE11-202ENST00000450699 704 ntBASIC17.39■□□□□ 0.37
MRE11P49959 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 KRT8P48-201ENST00000515599 1220 ntBASIC17.39■□□□□ 0.37
MRE11P49959 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.39■□□□□ 0.37
MRE11P49959 SPDYE9P-201ENST00000570642 692 ntBASIC17.39■□□□□ 0.37
MRE11P49959 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.39■□□□□ 0.37
MRE11P49959 SPDYE10P-202ENST00000612005 668 ntBASIC17.39■□□□□ 0.37
MRE11P49959 SPDYE8P-202ENST00000612377 668 ntBASIC17.39■□□□□ 0.37
MRE11P49959 GPR182-203ENST00000622922 591 ntBASIC17.39■□□□□ 0.37
MRE11P49959 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.39■□□□□ 0.37
MRE11P49959 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
MRE11P49959 AL607033.1-201ENST00000623900 1599 ntBASIC17.39■□□□□ 0.37
MRE11P49959 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
MRE11P49959 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC17.39■□□□□ 0.37
MRE11P49959 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MRE11P49959 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.38■□□□□ 0.37
MRE11P49959 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
MRE11P49959 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MRE11P49959 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms