Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.85■□□□□ 0.61
COL18A1P39060 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC18.85■□□□□ 0.61
COL18A1P39060 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.85■□□□□ 0.61
COL18A1P39060 AC026336.4-201ENST00000624565 1050 ntBASIC18.85■□□□□ 0.61
COL18A1P39060 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 USP39-220ENST00000613444 2161 ntTSL 2 BASIC18.85■□□□□ 0.61
COL18A1P39060 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.85■□□□□ 0.61
COL18A1P39060 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC18.85■□□□□ 0.61
COL18A1P39060 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL18A1P39060 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL18A1P39060 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC18.84■□□□□ 0.61
COL18A1P39060 RN7SL128P-201ENST00000467883 305 ntBASIC18.84■□□□□ 0.61
COL18A1P39060 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 AC022447.6-201ENST00000515522 438 ntBASIC18.84■□□□□ 0.61
COL18A1P39060 RN7SKP155-201ENST00000516031 288 ntBASIC18.84■□□□□ 0.61
COL18A1P39060 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC18.84■□□□□ 0.61
COL18A1P39060 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC18.84■□□□□ 0.61
COL18A1P39060 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC18.84■□□□□ 0.61
COL18A1P39060 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC18.84■□□□□ 0.61
COL18A1P39060 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 ESR1-214ENST00000638569 132 ntTSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL18A1P39060 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL18A1P39060 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC18.84■□□□□ 0.61
COL18A1P39060 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL18A1P39060 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.83■□□□□ 0.61
COL18A1P39060 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 LINC00483-202ENST00000419688 558 ntTSL 3 BASIC18.83■□□□□ 0.61
COL18A1P39060 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC18.83■□□□□ 0.61
COL18A1P39060 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
COL18A1P39060 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC18.83■□□□□ 0.61
COL18A1P39060 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC18.83■□□□□ 0.61
COL18A1P39060 MIR5001-201ENST00000580185 100 ntBASIC18.83■□□□□ 0.61
COL18A1P39060 AL031673.1-201ENST00000611460 466 ntBASIC18.83■□□□□ 0.61
COL18A1P39060 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.83■□□□□ 0.61
COL18A1P39060 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
COL18A1P39060 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 AC018529.2-202ENST00000611482 3087 ntBASIC18.83■□□□□ 0.61
COL18A1P39060 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL18A1P39060 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
COL18A1P39060 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC18.83■□□□□ 0.6
COL18A1P39060 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL18A1P39060 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
COL18A1P39060 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC18.83■□□□□ 0.6
COL18A1P39060 UROS-201ENST00000368774 744 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms