Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
RPA3P35244 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
RPA3P35244 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
RPA3P35244 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 AL353779.1-201ENST00000434793 351 ntBASIC15.05■□□□□ -0
RPA3P35244 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.05■□□□□ -0
RPA3P35244 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 RN7SL399P-201ENST00000471648 279 ntBASIC15.05■□□□□ -0
RPA3P35244 FAM86LP-201ENST00000478302 853 ntBASIC15.05■□□□□ -0
RPA3P35244 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 AC000095.1-201ENST00000603208 874 ntBASIC15.05■□□□□ -0
RPA3P35244 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC15.05■□□□□ -0
RPA3P35244 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.05■□□□□ -0
RPA3P35244 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
RPA3P35244 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.05■□□□□ -0
RPA3P35244 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC15.05■□□□□ -0
RPA3P35244 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.05■□□□□ -0
RPA3P35244 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
RPA3P35244 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RPA3P35244 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.04■□□□□ -0
RPA3P35244 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
RPA3P35244 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.04■□□□□ -0
RPA3P35244 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.04■□□□□ -0
RPA3P35244 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.04■□□□□ -0
RPA3P35244 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.04■□□□□ -0
RPA3P35244 AC004066.1-201ENST00000502488 802 ntBASIC15.04■□□□□ -0
RPA3P35244 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.04■□□□□ -0
RPA3P35244 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.04■□□□□ -0
RPA3P35244 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 AC099568.2-201ENST00000609194 695 ntBASIC15.04■□□□□ -0
RPA3P35244 AL391069.4-201ENST00000609583 481 ntBASIC15.04■□□□□ -0
RPA3P35244 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.04■□□□□ -0
RPA3P35244 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
RPA3P35244 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
RPA3P35244 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
RPA3P35244 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC15.04■□□□□ -0
RPA3P35244 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.04■□□□□ -0
RPA3P35244 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
RPA3P35244 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.03■□□□□ -0
RPA3P35244 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
RPA3P35244 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
RPA3P35244 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.03■□□□□ -0
RPA3P35244 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.03■□□□□ -0
RPA3P35244 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.03■□□□□ -0
RPA3P35244 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.03■□□□□ -0
RPA3P35244 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.03■□□□□ -0
RPA3P35244 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
RPA3P35244 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.03■□□□□ -0
RPA3P35244 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.03■□□□□ -0
RPA3P35244 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.03■□□□□ -0
RPA3P35244 TMEM198B-204ENST00000484016 896 ntBASIC15.03■□□□□ -0
RPA3P35244 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.03■□□□□ -0
RPA3P35244 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms