Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.99□□□□□ -0.01
PTPN4P29074 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN4P29074 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN4P29074 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PTPN4P29074 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN4P29074 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PTPN4P29074 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 AC015818.8-201ENST00000587907 1519 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN4P29074 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 CLK3P2-201ENST00000427566 1453 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PTPN4P29074 AC079776.1-201ENST00000401540 1152 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN4P29074 AC112492.5-201ENST00000421897 457 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN4P29074 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.98□□□□□ -0.01
PTPN4P29074 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 AC007389.4-201ENST00000454674 793 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.98□□□□□ -0.01
PTPN4P29074 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.98□□□□□ -0.01
PTPN4P29074 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.98□□□□□ -0.01
PTPN4P29074 WFDC1-204ENST00000613603 549 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 MIR8072-201ENST00000614241 80 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 MIR6805-201ENST00000615055 62 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PTPN4P29074 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 KRT8P37-201ENST00000451609 1420 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC14.98□□□□□ -0.01
PTPN4P29074 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 AC005562.1-201ENST00000583030 3219 ntBASIC14.98□□□□□ -0.01
PTPN4P29074 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
PTPN4P29074 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PTPN4P29074 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PTPN4P29074 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PTPN4P29074 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.97□□□□□ -0.01
PTPN4P29074 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
PTPN4P29074 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 EEF1DP4-201ENST00000446006 880 ntBASIC14.97□□□□□ -0.01
PTPN4P29074 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 AL033527.5-201ENST00000641382 801 ntBASIC14.97□□□□□ -0.01
PTPN4P29074 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
PTPN4P29074 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
PTPN4P29074 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.97□□□□□ -0.01
PTPN4P29074 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
PTPN4P29074 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms