Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
RB1P06400 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
RB1P06400 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.5■□□□□ 0.07
RB1P06400 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
RB1P06400 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
RB1P06400 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 IDS-203ENST00000428056 1213 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 ST13P19-201ENST00000442505 1124 ntBASIC15.5■□□□□ 0.07
RB1P06400 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC15.5■□□□□ 0.07
RB1P06400 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 AC005041.3-201ENST00000606287 649 ntBASIC15.5■□□□□ 0.07
RB1P06400 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
RB1P06400 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
RB1P06400 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
RB1P06400 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
RB1P06400 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC15.5■□□□□ 0.07
RB1P06400 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 FLJ16779-201ENST00000612722 7638 ntBASIC15.49■□□□□ 0.07
RB1P06400 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC15.49■□□□□ 0.07
RB1P06400 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 AC092850.2-201ENST00000623821 2697 ntBASIC15.49■□□□□ 0.07
RB1P06400 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 AC087481.3-201ENST00000602886 1894 ntBASIC15.49■□□□□ 0.07
RB1P06400 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.49■□□□□ 0.07
RB1P06400 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 AC073869.2-201ENST00000417338 1026 ntBASIC15.49■□□□□ 0.07
RB1P06400 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.49■□□□□ 0.07
RB1P06400 ERP29P1-201ENST00000442902 706 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC15.49■□□□□ 0.07
RB1P06400 RPL35P9-201ENST00000446059 350 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC018638.5-201ENST00000450885 754 ntBASIC15.49■□□□□ 0.07
RB1P06400 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
RB1P06400 RPL18AP8-201ENST00000486071 528 ntBASIC15.49■□□□□ 0.07
RB1P06400 LINC00634-202ENST00000505157 222 ntBASIC15.49■□□□□ 0.07
RB1P06400 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.49■□□□□ 0.07
RB1P06400 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC15.49■□□□□ 0.07
RB1P06400 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.49■□□□□ 0.07
RB1P06400 MIR2392-201ENST00000584881 84 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC140113.1-201ENST00000603467 169 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC007250.1-201ENST00000608934 338 ntBASIC15.49■□□□□ 0.07
RB1P06400 AC073592.2-201ENST00000623062 780 ntBASIC15.49■□□□□ 0.07
RB1P06400 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.49■□□□□ 0.07
RB1P06400 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.49■□□□□ 0.07
RB1P06400 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.49■□□□□ 0.07
RB1P06400 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.49■□□□□ 0.07
RB1P06400 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
RB1P06400 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.49■□□□□ 0.07
RB1P06400 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC15.49■□□□□ 0.07
RB1P06400 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
RB1P06400 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.48■□□□□ 0.07
RB1P06400 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
RB1P06400 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
RB1P06400 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC15.48■□□□□ 0.07
RB1P06400 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC15.48■□□□□ 0.07
RB1P06400 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms