Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.5□□□□□ -0.41
CD74P04233 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
CD74P04233 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC12.5□□□□□ -0.41
CD74P04233 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CD74P04233 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC12.5□□□□□ -0.41
CD74P04233 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CD74P04233 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 SNHG28-201ENST00000368102 2501 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 AL136172.1-201ENST00000598590 1394 ntBASIC12.49□□□□□ -0.41
CD74P04233 IL9RP2-201ENST00000423948 1312 ntBASIC12.49□□□□□ -0.41
CD74P04233 TUBB8P4-201ENST00000511806 1324 ntBASIC12.49□□□□□ -0.41
CD74P04233 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 AL627223.1-201ENST00000416693 442 ntBASIC12.49□□□□□ -0.41
CD74P04233 RPP21-221ENST00000428040 594 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC12.49□□□□□ -0.41
CD74P04233 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC12.49□□□□□ -0.41
CD74P04233 SATB1-217ENST00000493952 626 ntTSL 3 BASIC12.49□□□□□ -0.41
CD74P04233 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 MIR4453-201ENST00000584019 89 ntBASIC12.49□□□□□ -0.41
CD74P04233 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC12.49□□□□□ -0.41
CD74P04233 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC12.49□□□□□ -0.41
CD74P04233 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC12.49□□□□□ -0.41
CD74P04233 CAND2-206ENST00000626378 333 ntTSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CD74P04233 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC12.49□□□□□ -0.41
CD74P04233 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.49□□□□□ -0.41
CD74P04233 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.48□□□□□ -0.41
CD74P04233 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC12.48□□□□□ -0.41
CD74P04233 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC12.48□□□□□ -0.41
CD74P04233 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC12.48□□□□□ -0.41
CD74P04233 RPL37AP1-201ENST00000412502 279 ntBASIC12.48□□□□□ -0.41
CD74P04233 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.48□□□□□ -0.41
CD74P04233 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CD74P04233 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.48□□□□□ -0.41
CD74P04233 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms